PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528360.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 523aa MW: 56815.2 Da PI: 5.5528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	339	387	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_023528360.1 339 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 387 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF 60 TPTVLNDHTN SQSSRFCSGF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW 120 MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR 180 GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT 240 LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEAPKQINET AKNGALTRQN GDRDQNPNQN 300 PSFTTNKPAG KQGKQDSQPS DAPKEEYIHV RARRGQATNS HSLAERVRRE KISERMRLLQ 360 DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPKLDFNIEE LLTKEIMQSK 420 AGPSLFGFPP DLPMPYLPQH PTHHGVIPPC IPNMGSSPDL LRRTINSQLT SLVGGFKEPV 480 QLPNVWENEL HNVVPRNFDV AAPPSGQDVD GSTPPCNNTR AEL

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF  60
TPTVLNDHTN SQSSRFCSGF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW  120
MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR  180
GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT  240
LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEAPKQINET AKNGALTRQN GDRDQNPNQN  300
PSFTTNKPAG KQGKQDSQPS DAPKEEYIHV RARRGQATNS HSLAERVRRE KISERMRLLQ  360
DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPKLDFNIEE LLTKEIMQSK  420
AGPSLFGFPP DLPMPYLPQH PTHHGVIPPC IPNMGSSPDL LRRTINSQLT SLVGGFKEPV  480
QLPNVWENEL HNVVPRNFDV AAPPSGQDVD GSTPPCNNTR AEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-87	bHLH family protein