PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528373.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 400aa MW: 45306.6 Da PI: 7.9344

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.3e-15	73	132	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_023528373.1 73 SRFRGVSRHRWTGRFEAHLWDkLSWNMtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 132 789****************888865666447**********************987 PP
2	AP2	56.7	5.8e-18	175	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++gt eeAa+a++ a+ +++g XP_023528373.1 175 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYGTQEEAARAYDMAAIEYRG 226 89**99*******99654...4***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEAAALVLKN EENLRICWTG GQAQAIRRVK RRGREPAAAA AAAAAAAADQ TNKQQCVKQQ 60 SDQGPTTTMK RSSRFRGVSR HRWTGRFEAH LWDKLSWNMT QKKKGKQVYL GAYDEEESAA 120 RAYDLAALKY WGVTTITNFP VSEYEKEIET MQTMTKEEYL ASLRRKSSGF SRGVSKYRGV 180 ARHHHNGRWE ARIGRVYGNK YLYLGTYGTQ EEAARAYDMA AIEYRGINAV TNFDWSNYMA 240 WLKPPPVPPA ALNDVHTTSN PDKELCNSRS IPVEETSLFE NNHYDIDLFH SLQKQELLES 300 CSTPLNGYAK SSSPSALDLL LRSSFFKKLV EINSNLSVDD ADNGEETKTH VQLNSVFDEF 360 GDVFGDRLTD EPFVCSSNKD LQESELHSYF NGMFHRFKAA

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEAAALVLKN EENLRICWTG GQAQAIRRVK RRGREPAAAA AAAAAAAADQ TNKQQCVKQQ  60
SDQGPTTTMK RSSRFRGVSR HRWTGRFEAH LWDKLSWNMT QKKKGKQVYL GAYDEEESAA  120
RAYDLAALKY WGVTTITNFP VSEYEKEIET MQTMTKEEYL ASLRRKSSGF SRGVSKYRGV  180
ARHHHNGRWE ARIGRVYGNK YLYLGTYGTQ EEAARAYDMA AIEYRGINAV TNFDWSNYMA  240
WLKPPPVPPA ALNDVHTTSN PDKELCNSRS IPVEETSLFE NNHYDIDLFH SLQKQELLES  300
CSTPLNGYAK SSSPSALDLL LRSSFFKKLV EINSNLSVDD ADNGEETKTH VQLNSVFDEF  360
GDVFGDRLTD EPFVCSSNKD LQESELHSYF NGMFHRFKAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-94	AP2 family protein