PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528396.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 233aa MW: 26873.4 Da PI: 7.594

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	16	47	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT eEd+ l+++++ +G g W++ a+ g XP_023528396.1 16 KGPWTMEEDLTLINYIANHGEGVWNSLAKSAG 47 79**************************9988 PP
2	Myb_DNA-binding	55	1.9e-17	99	142	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ XP_023528396.1 99 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 142 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MDTQACNSVQ DVEVRKGPWT MEEDLTLINY IANHGEGVWN SLAKSAGNNP TFFFSLSREI 60 LIFSYRNALL KQNVVLGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI MELHAKWGNK 120 WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AHGFPTLQNT TNIGLSHEIM NEQAASSSSC 180 QVSYTMDPME TYSPPTYSQN MDAFSMPLPP TDNVNDNYWS MEDLWSMQLL NAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	8e-85	MYB family protein