PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528397.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 203aa MW: 23389.4 Da PI: 6.7891

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ l+++++ +G g W++ a+ g++Rt+k+c++rw++yl XP_023528397.1 16 KGPWTMEEDLTLINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ XP_023528397.1 69 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 112 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MDTQACNSVQ DVEVRKGPWT MEEDLTLINY IANHGEGVWN SLAKSAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI MELHAKWGNK WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ 120 AHGFPTLQNT TNIGLSHEIM NEQAASSSSC QVSYTMDPME TYSPPTYSQN MDAFSMPLPP 180 TDNVNDNYWS MEDLWSMQLL NAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	6e-91	MYB family protein