PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528485.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 256aa MW: 27649.3 Da PI: 9.4074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H +H XP_023528485.1 92 YQCKTCDRYFPSFQALGGHRASH 114 9***********99999998887 PP
2	zf-C2H2	14	0.00015	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_023528485.1 168 HECSICGAEFSSGQALGGHMRRH 190 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MAETPDENQA QIMKGKRTKR SRPPSVSSAS SAADCSSSSA GLAREGEEDQ DLANCLMLLA 60 QGRTRTGACS SSSSSPVLVR QKLAANQSLF LYQCKTCDRY FPSFQALGGH RASHKKPKFN 120 NIVNTSVPQP HFTPSDSIQL SLQLSTTSRL PPPPPPAAVN DLIKPKVHEC SICGAEFSSG 180 QALGGHMRRH RALTANPTRG ATTTTTTTTP QLQDLMTKKK RNMLELDLNL PAPEEDRHRP 240 PVAVFSGASP LVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-43	C2H2 family protein