PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528535.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 547aa MW: 58831.7 Da PI: 7.9354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.5e-09	360	407	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P++ +k Ka +L + ++Y++sLq XP_023528535.1 360 SHSLAERVRREKISKRMKFLQDLVPSC----NKVTGKAVMLDEIINYVQSLQ 407 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MENEFFMNDG CGFSGMEIQP NELNSSGLFT SNWENSMDQS DLFESTLSSI VSSPVNSHAG 60 NVIGGGGGGG GGGGGGDNLM MRELIGRLGS ICNSGEISPH SYIGGTNNNS TNTSCYNTPL 120 NSPPKLNLSS IGGNLIPLHQ NLAPFSADPG FTERAARFSC FGNRNLAGLN GHLSSNETLE 180 LGAGMESGKL SRVSSNKSFN IGGIGSQMGV QEGEQSPIQK GNSMRIPNKK VLNRFSRSST 240 PENTGDSPEG SSVSEQITGG ELGFKGKPEI NTRKRKSILT GQAKDLKVAG EKHESNGKKI 300 KPDEASKKEI DAAKGKAEAK DGSKALGVAN PKQKNDNSKP PEPPKDYIHV RARRGQATDS 360 HSLAERVRRE KISKRMKFLQ DLVPSCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLTTV 420 NPRMDLNMET LLPKDIFKGP GSSSLTVYPM DSSMPAFAYD YQSMHMPPLH SSISIGTEKQ 480 FSVASSSDQQ RNLSAQIPSG YNEVGNGIQI SKFWEDELHT VVQMGYGQNQ LQSSNGSMAA 540 DEMKSER

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MENEFFMNDG CGFSGMEIQP NELNSSGLFT SNWENSMDQS DLFESTLSSI VSSPVNSHAG  60
NVIGGGGGGG GGGGGGDNLM MRELIGRLGS ICNSGEISPH SYIGGTNNNS TNTSCYNTPL  120
NSPPKLNLSS IGGNLIPLHQ NLAPFSADPG FTERAARFSC FGNRNLAGLN GHLSSNETLE  180
LGAGMESGKL SRVSSNKSFN IGGIGSQMGV QEGEQSPIQK GNSMRIPNKK VLNRFSRSST  240
PENTGDSPEG SSVSEQITGG ELGFKGKPEI NTRKRKSILT GQAKDLKVAG EKHESNGKKI  300
KPDEASKKEI DAAKGKAEAK DGSKALGVAN PKQKNDNSKP PEPPKDYIHV RARRGQATDS  360
HSLAERVRRE KISKRMKFLQ DLVPSCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLTTV  420
NPRMDLNMET LLPKDIFKGP GSSSLTVYPM DSSMPAFAYD YQSMHMPPLH SSISIGTEKQ  480
FSVASSSDQQ RNLSAQIPSG YNEVGNGIQI SKFWEDELHT VVQMGYGQNQ LQSSNGSMAA  540
DEMKSER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	TRKRKS
2	273	301	RKRKSILTGQAKDLKVAGEKHESNGKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-69	bHLH family protein