PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528594.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 228aa MW: 25665.1 Da PI: 9.3851

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	148	189	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR++i +++ L++l+P K++ a++L +A Y+k L XP_023528594.1 148 AARKRREKISEKIRALQRLVPGG-----SKMDTASMLDEAASYLKFL 189 669****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MDDLLWNGSW SNEEDNRCNE SLFVSGDPRH CSILPLQELQ IVARTLRLRE VAKDEGASME 60 ELENDKGIAP KGGVLDIFEN QKPKQQNSTT SSSNNDQVKP FNRDRAMSQM KELVYYAAVF 120 RPVSSGSETV EKKRRRNVKT SKEPQTVAAR KRREKISEKI RALQRLVPGG SKMDTASMLD 180 EAASYLKFLR AQIKALEGLS YKLGSIDCLS TSTSFNPPFP TINAYFPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	153	KKRRRNVKTSKEPQTVAARKRR
2	132	155	KKRRRNVKTSKEPQTVAARKRREK
3	133	154	KKRRRNVKTSKEPQTVAARKRR
4	133	156	KKRRRNVKTSKEPQTVAARKRREK
5	134	155	KKRRRNVKTSKEPQTVAARKRR
6	150	155	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-33	bHLH family protein