PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528603.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 435aa MW: 47656.1 Da PI: 8.3277

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54	4.1e-17	76	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_023528603.1 76 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 135 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MASSSSDPGF KHEPGSCSAA AAAVAGGGAA ESSEVVMAND QLLLYRGLKK AKKERGCTAK 60 ERISKMPPCA AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ VYLGAYDEEE 120 AAARAYDLAA LKYWGPGTLI NFPVTDYSRD LEEMQNVSRE EYLASLRRKS SGFSRGISKY 180 RGLSSRWDPS FSRVPGPEYI NSINYGAGDD QATEGEFVPG FCIEKKIDLT SHIKWWGPNK 240 TRTASAGSKS SEEDKHSSCA GEVGSELKAL GQTTRPTEPY EMPCLGTLHD VKKTTSRVSA 300 LSILSRSAAY KSLQEKALKL QEINNENDEN ENKNTVNKID HGKVVETHTS HGGDPSERYG 360 VAFGTSGGLP LQRNMFPLTS FLTAPLLSSY NTVDPLGDPI HWTSLVSVLP TGLSRAAEVT 420 KTETSSTYTL FQPEE

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MASSSSDPGF KHEPGSCSAA AAAVAGGGAA ESSEVVMAND QLLLYRGLKK AKKERGCTAK  60
ERISKMPPCA AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ VYLGAYDEEE  120
AAARAYDLAA LKYWGPGTLI NFPVTDYSRD LEEMQNVSRE EYLASLRRKS SGFSRGISKY  180
RGLSSRWDPS FSRVPGPEYI NSINYGAGDD QATEGEFVPG FCIEKKIDLT SHIKWWGPNK  240
TRTASAGSKS SEEDKHSSCA GEVGSELKAL GQTTRPTEPY EMPCLGTLHD VKKTTSRVSA  300
LSILSRSAAY KSLQEKALKL QEINNENDEN ENKNTVNKID HGKVVETHTS HGGDPSERYG  360
VAFGTSGGLP LQRNMFPLTS FLTAPLLSSY NTVDPLGDPI HWTSLVSVLP TGLSRAAEVT  420
KTETSSTYTL FQPEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-162	AP2 family protein