PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528710.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 377aa MW: 42952 Da PI: 9.9818

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg ++R +k+c +rw +yl XP_023528710.1 4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMGkpLHRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	32.3	2.4e-10	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ +++E+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_023528710.1 59 KGSLSPDEQTLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789***************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG 60 SLSPDEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKTQNLTQR 120 RDYQNSDGNI PIVGVSSPEK TVQGPYDHIL ETFAEKYVQP KIYAAAFQSP PPPPRLSVPE 180 ADPVLSLGSV SSTTSSPTVL PLWMNVNSTS TASSSTASTT PSPSVSLTLS PSESAILESE 240 VNRILPVQQM GALVQYCKDL EEGRQNWVQH KKEATWRLNR LEQQLESEKA RKKREKMEEM 300 EAKIQRLREE EMAYLGRIES NYREQLSALQ RDADSKEAKL VESWCSKHAK LAKLVEKYGV 360 QGHGLVMVTG NSKDIIH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG  60
SLSPDEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKTQNLTQR  120
RDYQNSDGNI PIVGVSSPEK TVQGPYDHIL ETFAEKYVQP KIYAAAFQSP PPPPRLSVPE  180
ADPVLSLGSV SSTTSSPTVL PLWMNVNSTS TASSSTASTT PSPSVSLTLS PSESAILESE  240
VNRILPVQQM GALVQYCKDL EEGRQNWVQH KKEATWRLNR LEQQLESEKA RKKREKMEEM  300
EAKIQRLREE EMAYLGRIES NYREQLSALQ RDADSKEAKL VESWCSKHAK LAKLVEKYGV  360
QGHGLVMVTG NSKDIIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	RKKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-59	MYB family protein