PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528886.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 487aa MW: 53914 Da PI: 6.5728

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6.1e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023528886.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	43	1.2e-13	241	291	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_023528886.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 291 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA 60 FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA 120 PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQMSNF TKEEFVHILR RHSTGFSRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAALKCN GKEAVTNFEP 300 SSYVAEMASE AAGTAGLLLL WLYNLVTRSI ELTFGIENCV DYVPYAENNQ ILDLNLGIAP 360 PNLCEAQSES IAMFERRAMP ENSVSAAIRS SHSQPYSFAV PSNYHSPWSV SNSSFFPNSR 420 ERATEMRMGV GSWEWQIHGH PSGTTSVPLF SAAASSGFPS SSSSTAIPSA SSGVGETHFP 480 AIFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MLDLNLQVVS SDSVEMVTER LFQFPAIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA  60
FGKDCAVQEN LTAKSLCISD NHRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA  120
PERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQMSNF TKEEFVHILR RHSTGFSRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAALKCN GKEAVTNFEP  300
SSYVAEMASE AAGTAGLLLL WLYNLVTRSI ELTFGIENCV DYVPYAENNQ ILDLNLGIAP  360
PNLCEAQSES IAMFERRAMP ENSVSAAIRS SHSQPYSFAV PSNYHSPWSV SNSSFFPNSR  420
ERATEMRMGV GSWEWQIHGH PSGTTSVPLF SAAASSGFPS SSSSTAIPSA SSGVGETHFP  480
AIFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-95	AP2 family protein