PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023528887.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 467aa MW: 51475 Da PI: 6.8374

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023528887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.8e-17	160	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023528887.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 209 78*****************......55**********************997 PP
2	AP2	43.1	1.1e-13	252	302	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_023528887.1 252 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 302 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MAFAERGASN PMLDLNLQVV SSDSVEMVTE RLFQFPAIRM ESAGSFNGDL SASTTGDEDS 60 SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNHRDQTMEL FPLTGGLSSG SSSQKQWLEV 120 SPPEFHYWGG APERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD 180 CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQMSN FTKEEFVHIL 240 RRHSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAALKC 300 NGKEAVTNFE PSSYVAEMAS EAAGTAENNQ ILDLNLGIAP PNLCEAQSES IAMFERRAMP 360 ENSVSAAIRS SHSQPYSFAV PSNYHSPWSV SNSSFFPNSR ERATEMRMGV GSWEWQIHGH 420 PSGTTSVPLF SAAASSGFPS SSSSTAIPSA SSGVGETHFP AIFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MAFAERGASN PMLDLNLQVV SSDSVEMVTE RLFQFPAIRM ESAGSFNGDL SASTTGDEDS  60
SSNADEAFPF AFGKDCAVQE NLTAKSLCIS DNHRDQTMEL FPLTGGLSSG SSSQKQWLEV  120
SPPEFHYWGG APERRITAPP GQQQHQPMRK NRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFNVSD YDEDIKQMSN FTKEEFVHIL  240
RRHSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAALKC  300
NGKEAVTNFE PSSYVAEMAS EAAGTAENNQ ILDLNLGIAP PNLCEAQSES IAMFERRAMP  360
ENSVSAAIRS SHSQPYSFAV PSNYHSPWSV SNSSFFPNSR ERATEMRMGV GSWEWQIHGH  420
PSGTTSVPLF SAAASSGFPS SSSSTAIPSA SSGVGETHFP AIFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-98	AP2 family protein