PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528957.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 259aa    MW: 30105.8 Da    PI: 4.4071
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.4e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n   r  tf +R+n ++KKA+ELS+LCd++ +v+i ++
  XP_023528957.1 11 IRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGP 50
                    889999******************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MVRGKLSFNL IRNRKSRCST FKQRKNSLMK KAYELSTLCD VRTCVLINGP GFAPDEDPSL  60
SSVEFHTWPS NRSEVEHMIH AYKNGNCNLQ KRKCFDLSDY FSDRKRKLVT EMCKHREKVG  120
KIMWPDWDER LDCLSEQQLR EFMNGLDSRI EAAGRMIDFM DADNENLFGM FSCEEYENVV  180
QMGGDSSTPV PPLVELESPD SLNTPNPNPN EDEIGCNFEN LEFLLEDEDE NYMALYANLM  240
NDELDECNDI EQWLRTGNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191107KRKCFDLSDYFSDRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-17M-type_MADS family protein