PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529120.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 313aa    MW: 34760.4 Da    PI: 4.4293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWTteEd++l++++   G g+W++ ++  g+ R++k+c++rw +yl
   XP_023529120.1 14 KGRWTTEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.74.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_023529120.1  67 RGNITSQEEDVIIKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGRRPCCEKV GLKKGRWTTE EDDRLKKYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TSQEEDVIIK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIKTFR  120
GRNDDVPVIV DEAKLSLLQR RKGGRGRRSK AEVEAEVARE ILPMPDLERE SSVCGGVDDI  180
TEERESRNEE TVDDAGEGRH DVGGGSVSLD FNDDVLEEDD MSLDLSELIT NVEVEWNDDT  240
AGTCESNTAT VAVVDAGTAE MELGGECSSV SSSFSLDSPW NWESFAGGHE WDAVEFDAGD  300
AAEPDAVISW LLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-69MYB family protein