PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529198.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 337aa    MW: 37857.4 Da    PI: 7.5725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.43.9e-3040144199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed+ g+sW+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_023529198.1  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGlGHlGK 134
                     89***************************9555568889************************************************65566666 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      ++++  +r+
  XP_023529198.1 135 DRFFIDCRRR 144
                     6667777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDLGSCSRFA LDSSTDFEKE EQQQQEMESS SLFVEKEHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDS SSNDKGLLLN FEDRCGKSWR FRYSYWTSSQ SYVMTKGWSR FVKEKRLDAG  120
DIVSFQRGLG HLGKDRFFID CRRRPPHAPL DTPITFHHNH HLHGGGAAGV AQIPHHFHLH  180
QWTPVATPLS LPRDHLLHLP QNNSNHNNLT LFHNHNFNLY NHHYLNPPPI RDGGDSPSVL  240
YHLRSAPPPP PVAVGGGGGG IGKGAASSKT LRLFGVNMEC AVSEDQSDDE CDITTSTTTM  300
SPQFRVYDGM PMSIPIPMPN SNNKLTTDFF NKGRSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-62B3 family protein