PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529404.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family Nin-like
Protein Properties Length: 303aa    MW: 34798 Da    PI: 6.764
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.71.5e-25150199352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     k +s +++s+yF +pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  XP_023529404.1 150 KGLSRKTISEYFWMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 199
                     77999******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MISLFITQNP KLISFLHDFV ICSCALILVF RFIGCAPSPM PSPLNSFPFL LPLQFSNSFG  60
EEEMDPFPSS CHLSPLHFSN CNFGFQDSIF DVVPLFETCP NDSFLVLKDI EPNNTIISED  120
GGENEKKGLE RKEGRGKRKW CGERSSSPSK GLSRKTISEY FWMPITQAAK ELNVGLTLLK  180
KRCRELGIRR WPHRKLMSLQ TLIKNVKELE KEDGVKLRHV LEILENEKKL MEERPDLQLE  240
DNTKRLRQAC FKANYKKKRL SGTNNSSATR VHQDDDEEEE DEEMKYLLAD CSFSFTGGSL  300
LLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.16e-54Nin-like family protein