PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529437.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

RAV

Protein Properties

Length: 342aa MW: 38367.2 Da PI: 9.6199

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.7e-14	60	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g XP_023529437.1 60 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAQRFRG 108 689*9788.8*****3.....5***********************98 PP
2	B3	93.8	1.2e-29	181	282	1	96
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ tpsdv+k++rlv+pk++ae++ + + ++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk gD+v F + ++ XP_023529437.1 181 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKPGDIVSFLKSPGQD 275 89***********************9998733334677899999999*************************************9543366 PP E..EEEE CS B3 90 felvvkv 96 ++l++ + XP_023529437.1 276 KQLYIEW 282 6666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDGICIDRTT STESQSTNFP LLKSPPPETS LCRVGSGFTS VVLDSDSCGV EAESRKLPSS 60 RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD VAAQRFRGRD AVTNFKDEDN 120 DDDVSAFLNS HSKAEIVDML RKHTYLHELH QSKRNAGLSG LDRKHNRSLS GLDSEARELL 180 FEKAVTPSDV GKLNRLVIPK QHAEKNFPLQ TGSTASSKGL LLNFEDGGGK VWRFRYSYWN 240 SSQSYVLTKG WSRFVKEKNL KPGDIVSFLK SPGQDKQLYI EWKSRKASPT TDPNINPVHI 300 VRLFGVDIVK ASSPNTGCGE KRRELEFLAF QCTKKQRIVG AL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDGICIDRTT STESQSTNFP LLKSPPPETS LCRVGSGFTS VVLDSDSCGV EAESRKLPSS  60
RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD VAAQRFRGRD AVTNFKDEDN  120
DDDVSAFLNS HSKAEIVDML RKHTYLHELH QSKRNAGLSG LDRKHNRSLS GLDSEARELL  180
FEKAVTPSDV GKLNRLVIPK QHAEKNFPLQ TGSTASSKGL LLNFEDGGGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKNL KPGDIVSFLK SPGQDKQLYI EWKSRKASPT TDPNINPVHI  300
VRLFGVDIVK ASSPNTGCGE KRRELEFLAF QCTKKQRIVG AL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-142	RAV family protein