PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529501.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 505aa MW: 54844.4 Da PI: 5.108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	321	363	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_023529501.1 321 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 363 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MLPKSTGILW LDGDHDDAAS WTRATDDHYD DIAIAGSISS FKSMLEPDCF INSSSAPLNS 60 SLHRFNPTDN FLSSCSPSQP FALDPSQSML PSHKSCFSSL LNVVCGSNFD NAYDFGGDTA 120 LFGSYQGNQA SNPSVFMGFT GVSPLPQIGN QSLSLNHSEF PVADNPPAFG DGFNPAAAFE 180 SFDGCGNALF QNRPKVLRPL EVLPQVGAQP TLFQKRAAHR VVSPGADKLE NLEVSGLKFG 240 EGSTWTADLE NLNKNNGDED GEDGSVDVSR FNYDSDEGNE YNKQEDNVNA KNCGSNSNAN 300 STVTGGDQKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL 360 KELLQRINDL HNELESTPSG SLLQPSASFH PLTPTLPTLP CRVKEELCPS SLCSPKNQPA 420 RVEVRVREGR AVNIHMFCSC KPGLLLSTMR ALDSLGLDIQ QAVISCFNGF ALDVFRAEQS 480 KEGQEIIPEQ IKAVLLESAG LHGVM

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MLPKSTGILW LDGDHDDAAS WTRATDDHYD DIAIAGSISS FKSMLEPDCF INSSSAPLNS  60
SLHRFNPTDN FLSSCSPSQP FALDPSQSML PSHKSCFSSL LNVVCGSNFD NAYDFGGDTA  120
LFGSYQGNQA SNPSVFMGFT GVSPLPQIGN QSLSLNHSEF PVADNPPAFG DGFNPAAAFE  180
SFDGCGNALF QNRPKVLRPL EVLPQVGAQP TLFQKRAAHR VVSPGADKLE NLEVSGLKFG  240
EGSTWTADLE NLNKNNGDED GEDGSVDVSR FNYDSDEGNE YNKQEDNVNA KNCGSNSNAN  300
STVTGGDQKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL  360
KELLQRINDL HNELESTPSG SLLQPSASFH PLTPTLPTLP CRVKEELCPS SLCSPKNQPA  420
RVEVRVREGR AVNIHMFCSC KPGLLLSTMR ALDSLGLDIQ QAVISCFNGF ALDVFRAEQS  480
KEGQEIIPEQ IKAVLLESAG LHGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	329	KKKGMPAKNLMAERRRRKK
2	323	330	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-121	bHLH family protein