PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529551.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 190aa    MW: 21429.4 Da    PI: 7.7039
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY205.22.5e-6371645170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk.veeenlksnvekeesastsvss 98 
                      ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++  +     +l    + + + ++ s  + ++++++ + s
  XP_023529551.1   7 IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV-QVPNY-NLYTSSGpDFQGDFGSSSKCDNNKMQIRDS 99 
                     689***********************************************99999985.22222.222222202222333333222222222222 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                               +++   v+rPPekrqrvPsayn+fikeei+rika+nP+ishreafs+aaknWahfP+ihfgl
  XP_023529551.1 100 -------ATIAAEERVVNRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGL 164
                     .......22233334589****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MSSCIDIAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQVPNYN LYTSSGPDFQ GDFGSSSKCD NNKMQIRDSA TIAAEERVVN RPPEKRQRVP  120
SAYNQFIKEE IRRIKAKNPE ISHREAFSTA AKNWAHFPRI HFGLMFETNN QVKIDDGSER  180
LMSMAALLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-84YABBY family protein