PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529968.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 278aa MW: 31731.9 Da PI: 6.3149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	2.9e-52	15	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....................kvkaeekewyfFskrdkkyatgkr 73 lppGfrFhPtdeel+++yL +kv ++ + +i+evd++k+ePwdLp + k+k +ekewyfF+ rd+ky++g r XP_023529968.1 15 LPPGFRFHPTDEELITHYLSQKVVSSGFCS-PAIAEVDLNKCEPWDLPgNsaatewflrlclceqlnlctgKAKMGEKEWYFFCVRDRKYPSGLR 108 79***********************877.78***********5489**********999987778999************* PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +nratk+gyWkatgkd+e+++ ++ lvg kktLvfykgrap+g+k++Wvmheyrl XP_023529968.1 109 TNRATKAGYWKATGKDREIFK-GRCLVGFKKTLVFYKGRAPRGQKSNWVMHEYRL 162 *****************.999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MEKSEEEEDQ TVMELPPGFR FHPTDEELIT HYLSQKVVSS GFCSPAIAEV DLNKCEPWDL 60 PGNSAATEWF LRLCLCEQLN LCTGKAKMGE KEWYFFCVRD RKYPSGLRTN RATKAGYWKA 120 TGKDREIFKG RCLVGFKKTL VFYKGRAPRG QKSNWVMHEY RLHAQSSAFS QKEWVICRVL 180 KKRSGKKGEE TGMSSTVLPP LMESEASLVT CFSNSMEDGT ELLDKFWSGH FEEEEEDGGG 240 EVWRLKVGSS KGFEEPFGFG ANHHPSPPLD DVHCLWNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	4e-84	NAC family protein