PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023529980.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 678aa    MW: 73992.1 Da    PI: 6.2096
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023529980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.85.9e-29211264155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_023529980.1 211 KPRVVWSVELHKKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 264
                     79*******************.********************************8 PP
2Myb_DNA-binding41.62.8e-13213263148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I   m+ +g+t++++ s++qky+
   XP_023529980.1 213 RVVWSVELHKKFVSAVNQLGLEkaVPKKILDLMNvEGLTRENVASHLQKYR 263
                      678***********************************************7 PP
3Response_reg84.63e-28261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l++ +y +v++++++ eal++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ e++ + ++ G
  XP_023529980.1  26 VLAVDDDPICLKVLETLLRRCQY-HVTTTKQSIEALKMLRENRnnFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTELVMKGISHG 118
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_023529980.1 119 ACDYLLKPVRIEELKN 134
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MTVETHSVTS VGDDGATDRF PVGMRVLAVD DDPICLKVLE TLLRRCQYHV TTTKQSIEAL  60
KMLRENRNNF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTEL VMKGISHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKLEPKAK NKFPSEDKAL NGGSEGEQGF SSTSNADNAK  180
FNRKRKDQDD DDDEDGKDNG LDNDDPSNQK KPRVVWSVEL HKKFVSAVNQ LGLEKAVPKK  240
ILDLMNVEGL TRENVASHLQ KYRLYLKRIS NVASQQVSMV ATFGSKDGAF MGMGSLDGYG  300
DLHGFAGMGR LQNSSLSSYS PVGMLGRLNS PAGMSLRGIT SSGLIQQNSK NLNSAISNLG  360
KLQPTTMLPP NQPTNLLQGI PTSLELSQLQ HSKSTIPIGD FNIINETSGF GVPNSFPDSR  420
VNIGNSTNLV STAPLMLQGT MPTYGNQTSL RVDPLNGETF DVDIGGSNFL DPDPSNGTWQ  480
GAAQLSRFSA NSLNQNQAYP NDQFNAINSS ISLTPSTFGN VSVDFSSRSA VAAPLQDSRD  540
MQCQAGVVGS VIPTINTMPK QSWEELKHDY SRNVQHNLGA INSLISGNET LNPLSQSFNQ  600
NNLVYDRKVS SSLMVPSNAA PLSFAQHNMV EKLGPNTKTN VDGNYLLNQT KSHDGSTQGS  660
SESLDYIMNA MIKRDSAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-131ARR-B family protein