PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530040.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23977.8 Da    PI: 9.6036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-151150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ t+ kR++g+lKK +EL +LC+++++ i+fs+
  XP_023530040.1 11 IVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSP 50
                    789************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MARKKVKLAY IVNDSARKAT YKKRKKGLLK KLSELTTLCG IQACAIVFSP YDSPPELWPS  60
VLGVQRVLSQ FKNMPEMEQS KKMVNQDTFL RQRIAKAEEQ LKKIRKENRE KEVTRLMFQI  120
LTGPEWLQGL TMGDLNDISW VIDETLKGIS KRIDSFKRLV PPPPQTGAWV MEVVSPEDGM  180
EFVGDDMGLS FEDHSYNSEN VIWSNAFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYIVNDSARKATYKKRK
21732RKATYKKRKKGLLKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-50M-type_MADS family protein