PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530041.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 1023aa MW: 114613 Da PI: 4.8311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_023530041.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_023530041.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVGEED RPVEQPKFPT 240 TIEELEGKRR IDVESQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QIADHELEEI AKMGYASDLL AGNEVLAEGS GATRALLANY AQTPRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 AGLTPRSGMT PARDAYSFGV TPKGTPIRDE LHINEDMDTH DSAKLESQRQ ADLRRNLSLG 480 LGNLPQPKNE YQVVMQPIPE DKEEPEEMIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPTAS LELIRNSLMR ADGDKSSFVP PTPIEQADEM IRKELLALLE HDNVKYPIDE 600 KVNKEKKKGS KRTGNRPAAA IPTIDDFEET EMQEADYLIK EEARYLCVAM GHENEPLEEF 660 VEAHKTCLND LMYFPTRSAY GLSSVAGNHE KLAALQDEFE YVKKKMDDDT EKAVRLEKKV 720 KVLTHGYETR SKQSIWPQIE ATFKQIDTAA TELECFEALK KQEMSAASHR ISGIWEEVQK 780 QKELERTLQL RYGNLFADLE KMTKIMDERK AQALKEEEIA AENRALQLAE AEANRTVGEN 840 ADSSEAVFAL AVDGENSMPP NELAGEQQNS SLGHEHEGSN AMDIDAEKES VAASSDIGLP 900 DDKLPSAVAE NDASSSDKAF DDSDKSQTID VPSQELVVPP ANGTPDVPVT VENKISNDLV 960 DGAAPTENAE CGTDIVKEGK DVESQQPVIE AGNSDVNSTN LDSSNNDVVE LPRGDEEATE 1020 SNV

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVGEED RPVEQPKFPT  240
TIEELEGKRR IDVESQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP  300
QIADHELEEI AKMGYASDLL AGNEVLAEGS GATRALLANY AQTPRQGMTP FRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG  420
AGLTPRSGMT PARDAYSFGV TPKGTPIRDE LHINEDMDTH DSAKLESQRQ ADLRRNLSLG  480
LGNLPQPKNE YQVVMQPIPE DKEEPEEMIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ  540
RELPRPPTAS LELIRNSLMR ADGDKSSFVP PTPIEQADEM IRKELLALLE HDNVKYPIDE  600
KVNKEKKKGS KRTGNRPAAA IPTIDDFEET EMQEADYLIK EEARYLCVAM GHENEPLEEF  660
VEAHKTCLND LMYFPTRSAY GLSSVAGNHE KLAALQDEFE YVKKKMDDDT EKAVRLEKKV  720
KVLTHGYETR SKQSIWPQIE ATFKQIDTAA TELECFEALK KQEMSAASHR ISGIWEEVQK  780
QKELERTLQL RYGNLFADLE KMTKIMDERK AQALKEEEIA AENRALQLAE AEANRTVGEN  840
ADSSEAVFAL AVDGENSMPP NELAGEQQNS SLGHEHEGSN AMDIDAEKES VAASSDIGLP  900
DDKLPSAVAE NDASSSDKAF DDSDKSQTID VPSQELVVPP ANGTPDVPVT VENKISNDLV  960
DGAAPTENAE CGTDIVKEGK DVESQQPVIE AGNSDVNSTN LDSSNNDVVE LPRGDEEATE  1020
SNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein