PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530341.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 676aa MW: 77978.9 Da PI: 7.4135

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.1e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k+ ++w+vt + ++HnHel XP_023530341.1 63 EFYSEFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPMKTPNENKPQRNRKSSRCGCQAYMRISKTMelgPAEWRVTGFANHHNHELL 156 6************999887735667799**********999999****************99878789************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MMSEETGPLL VVYDDPSDQQ SPSLEETGST DESPDETRMS LDLSNDATPY IGQRFPTHDS 60 AYEFYSEFAK RCGFSIRRHR TEGKDGIGKG LTRRYFVCHR AGNTPMKTPN ENKPQRNRKS 120 SRCGCQAYMR ISKTMELGPA EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SEMDKARILM 180 YAKSGISVQQ MMRLMELEKG LEPGYLPFTE KDVRNLLQSF RKLEHEEESI DLLRMCQNIK 240 EKDPNFIFEF MIDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRWTAF DMPLGIWVGI 300 NNYGMPCLLS CVLLREENLR SFTWALKAFM GFMNGKAPQT ILTDQNLCLK DAIAMELPTT 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKR EFYRLYNLES IEDFEIGWRD MVYSFGLHTN 420 SPIANLYSTR FLWALPFLRS HFFAGMETID QSKTINAFIQ RFLSAQTRPR QFIEQVADAV 480 DFKDQQTMQQ NLQNISLKTG APMESHAATI LTPFAFSKLQ EQLVLAAHYA SFQMDDGFLV 540 RHHTKADGGR KVYWVPPEGI ISCSCRQFEF SGILCRHALR VLSTVNCFQI PESYLPVRWR 600 RISMPSAKLL QSTTNDHGER TQLLQSMVTT LVTESAKSRE RLDFATKQVS VLLSRVREHS 660 TSLPDSRDVS SIHRNL

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MMSEETGPLL VVYDDPSDQQ SPSLEETGST DESPDETRMS LDLSNDATPY IGQRFPTHDS  60
AYEFYSEFAK RCGFSIRRHR TEGKDGIGKG LTRRYFVCHR AGNTPMKTPN ENKPQRNRKS  120
SRCGCQAYMR ISKTMELGPA EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SEMDKARILM  180
YAKSGISVQQ MMRLMELEKG LEPGYLPFTE KDVRNLLQSF RKLEHEEESI DLLRMCQNIK  240
EKDPNFIFEF MIDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRWTAF DMPLGIWVGI  300
NNYGMPCLLS CVLLREENLR SFTWALKAFM GFMNGKAPQT ILTDQNLCLK DAIAMELPTT  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKR EFYRLYNLES IEDFEIGWRD MVYSFGLHTN  420
SPIANLYSTR FLWALPFLRS HFFAGMETID QSKTINAFIQ RFLSAQTRPR QFIEQVADAV  480
DFKDQQTMQQ NLQNISLKTG APMESHAATI LTPFAFSKLQ EQLVLAAHYA SFQMDDGFLV  540
RHHTKADGGR KVYWVPPEGI ISCSCRQFEF SGILCRHALR VLSTVNCFQI PESYLPVRWR  600
RISMPSAKLL QSTTNDHGER TQLLQSMVTT LVTESAKSRE RLDFATKQVS VLLSRVREHS  660
TSLPDSRDVS SIHRNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein