PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530459.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family AP2
Protein Properties Length: 466aa    MW: 51126.7 Da    PI: 8.4468
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15152211155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_023530459.1 152 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 211
                     57*******************666664477446*************************98 PP
2AP247.44.7e-15254305155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_023530459.1 254 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 305
                     57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MNSSSSSNSS SSSSSSSSSS SSSSSNWLAF SLANNPNSLS LFHHPNPPDL SIFSPKLEDF  60
LRGASTPPPL PPPFHFSPHQ TPLTFCEESE ICDSDLKTIA ASFLRGSPSQ FPEQHLQHHL  120
HAPPPHPLPD TLTNPPPPPP KKSVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  180
SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SDYEKDLENM KNMTRQEFVA  240
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  300
IKFRGLNAVT NFDISRYDVK SIASSNLPIG GMSATKSKPT TDSSASEDRD VHHSPVSSTA  360
TLLPSHPNTS TLAFGMPPIK QDPSDQYWSM FGYNVPPPTS SSSSFTMFQQ PSNPASTMFP  420
PVADLPPTAS PPPLPEGGAY EQHQQFAAPI ALSRASLFQT PIFGIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-138AP2 family protein