PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530624.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 286aa MW: 31949.2 Da PI: 7.9558

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	62	110	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+ ++++G+ +W + +r+ g++R++k+c++rw++yl XP_023530624.1 62 RGPWSPQEDATLKAFIHKHGTAgNWIALPRKAGLNRCGKSCRLRWLNYL 110 89****************99***********************97 PP
2	Myb_DNA-binding	43.3	8.6e-14	117	159	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l+ + lG++ W+ Ia+ ++ gRt++++k++w++ XP_023530624.1 117 GGFTLEEDNLICTLYSTLGSR-WAVIASQLP-GRTDNDVKNHWNT 159 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MRSPHVHPPF DHSLSSPFPL PIPHHTLYIH TIAPSMAALS LSKLVSFSMG RAPCCDKATV 60 KRGPWSPQED ATLKAFIHKH GTAGNWIALP RKAGLNRCGK SCRLRWLNYL RPDIKHGGFT 120 LEEDNLICTL YSTLGSRWAV IASQLPGRTD NDVKNHWNTK LKKKFNSFSE RPTPTIAAAT 180 QQNAITNMAF PANAPPYSAA ADWLRLDEQM DGNLMFADTN FDFKHDPEDQ FPMLWNPQEL 240 STSSSNSSLP IEQNQLPFGG NAGEALLSYG FYQYPYGDVM EGLDFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-68	MYB family protein