PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023530968.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 344aa MW: 39471.6 Da PI: 7.559

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023530968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.5	4.4e-21	120	172	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kpr+ Wt+eLHerFv a eqL G+++ +P +il+lm+ + L++e+v+SHLQk+R XP_023530968.1 120 KPRVSWTKELHERFVVAYEQL-GEKERVPNNILKLMNDPRLSRENVASHLQKHR 172 79*****************.99999************************9 PP
2	Myb_DNA-binding	39.2	1.6e-12	122	172	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r +WT+e++e++v a +qlG + ++ I + m+ +++++++ s++qk++ XP_023530968.1 122 RVSWTKELHERFVVAYEQLGEKerVPNNILKLMNdPRLSRENVASHLQKHR 172 679**********************************************97 PP
3	Response_reg	27.6	1.5e-10	1	53	56	109
SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 56 mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mdG+++l+ r+ ++p+++v+a+++ e++++ + Ga+ +l Kp++ +el++ XP_023530968.1 1 MDGFKILEIVRQGI-DIPVVMVSANEQLEMVKRGVMEGAEAYLLKPVSFQELRN 53 89999999888755.************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDGFKILEIV RQGIDIPVVM VSANEQLEMV KRGVMEGAEA YLLKPVSFQE LRNIWQHVLR 60 KRCRKRPNPD VMEQEQEQEQ HKPIISHERV TVIDKEDDAI DKNMNIDSNH FDSCSSSKKK 120 PRVSWTKELH ERFVVAYEQL GEKERVPNNI LKLMNDPRLS RENVASHLQK HRDMLRKKAT 180 GAGKLVGKKN CYDRNSIKAS KIQNSMSQRN NVSTIDQFQF SNLGRSSMEE LEGSKNYYPV 240 PEFKWFNNFA SNNLMSKPCD QYLGFGPSNN MNSNYPQSFG NCPMDNMGEI PEASGHLGWG 300 FPNNNTTSGQ CSQMQLVKGN SHVSLLMDDE LGDIFKQFQS EEAF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDGFKILEIV RQGIDIPVVM VSANEQLEMV KRGVMEGAEA YLLKPVSFQE LRNIWQHVLR  60
KRCRKRPNPD VMEQEQEQEQ HKPIISHERV TVIDKEDDAI DKNMNIDSNH FDSCSSSKKK  120
PRVSWTKELH ERFVVAYEQL GEKERVPNNI LKLMNDPRLS RENVASHLQK HRDMLRKKAT  180
GAGKLVGKKN CYDRNSIKAS KIQNSMSQRN NVSTIDQFQF SNLGRSSMEE LEGSKNYYPV  240
PEFKWFNNFA SNNLMSKPCD QYLGFGPSNN MNSNYPQSFG NCPMDNMGEI PEASGHLGWG  300
FPNNNTTSGQ CSQMQLVKGN SHVSLLMDDE LGDIFKQFQS EEAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	5e-39	ARR-B family protein