PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531075.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 391aa MW: 44894.2 Da PI: 8.631

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.6	4.2e-15	63	122	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_023531075.1 63 SRFRGVSRHRWTGRFEAHLWDkLSWNLtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 122 789****************888844555447**********************987 PP
2	AP2	56.8	5.6e-18	165	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++gt eeAa+a++ a+ +++g XP_023531075.1 165 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYGTQEEAARAYDMAAIEYRG 216 89**99*******99654...4***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MEAPALILKN EENLRICWTE GQVPATRRVK RRRRDPSTAS AIDQTKNKQQ SDQAPTTTTK 60 RSSRFRGVSR HRWTGRFEAH LWDKLSWNLT QKKKGKQVYL GAYDEEESAA RAYDLAALKY 120 WGVTTITNFQ ISDYEKEIEI MQTMTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE 180 ARIGRVYGNK YLYLGTYGTQ EEAARAYDMA AIEYRGINAV TNFDWSNYMA WLKPPLPPVA 240 TPNESHMTSD PLKELCNSSS IIPAEETSLF QNHHYHDNSF HSLQKQELLH KSCSIPLNSY 300 VKSSPSALNL LLRSSFFKKL IETNSNLSVD EADNGEEAKT RAVLDNVFDE FGDVFCDRLT 360 DETFVCSSDK ELQESELHSF LNGSFHRFKA S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MEAPALILKN EENLRICWTE GQVPATRRVK RRRRDPSTAS AIDQTKNKQQ SDQAPTTTTK  60
RSSRFRGVSR HRWTGRFEAH LWDKLSWNLT QKKKGKQVYL GAYDEEESAA RAYDLAALKY  120
WGVTTITNFQ ISDYEKEIEI MQTMTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE  180
ARIGRVYGNK YLYLGTYGTQ EEAARAYDMA AIEYRGINAV TNFDWSNYMA WLKPPLPPVA  240
TPNESHMTSD PLKELCNSSS IIPAEETSLF QNHHYHDNSF HSLQKQELLH KSCSIPLNSY  300
VKSSPSALNL LLRSSFFKKL IETNSNLSVD EADNGEEAKT RAVLDNVFDE FGDVFCDRLT  360
DETFVCSSDK ELQESELHSF LNGSFHRFKA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	35	RRVKRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-92	AP2 family protein