PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531078.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family SBP
Protein Properties Length: 191aa    MW: 21319.2 Da    PI: 9.5896
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.3e-4267144178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+e+C+adlseak yhrrhkvCevh+k++vvlv g +qrfCqqCsrfhelsefDe krsCrrrLa+hnerrrk +a
  XP_023531078.1  67 CCQAEKCTADLSEAKPYHRRHKVCEVHAKSQVVLVGGFRQRFCQQCSRFHELSEFDEMKRSCRRRLAGHNERRRKISA 144
                     6**************************************************************************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MDVGKIETAH QQKQRVVMEK GRVKEAMVVV DEDGEYDEDK KRKGVIVSVG SGGSGKKAAG  60
GGGGMRCCQA EKCTADLSEA KPYHRRHKVC EVHAKSQVVL VGGFRQRFCQ QCSRFHELSE  120
FDEMKRSCRR RLAGHNERRR KISAESNAEC SIRKGTGGAQ MKDSVCGQAD DQGRIQMTIQ  180
ENAAYKHFQI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.13e-46SBP family protein