PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531138.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 542aa MW: 61304.6 Da PI: 8.1713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.6e-06	86	106	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg XP_023531138.1 86 PCYFYFN-GFCSKGDTCTFLHG 106 7999999.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGEEFRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNAACSFRH 60 PPMDGAAGKV FESSQSSVPV NKTNIPCYFY FNGFCSKGDT CTFLHGNDIP VAARSTKIGN 120 TSSSEDKTAS SHKNGLASTD ADAFLHPSKK VVGPTIEGTF RESLSHPSAE NVSIRSACAK 180 ISLPECEKVA VDEPVSLPLT EGSKYSRSHV HVVADQSYEE PMMDSSEDEN PLESSTGFDV 240 VVGHESENLD SDDDSEYLLS TNLEQRELDT ELCRDDDEDY IAYEPMHSDL ELLYEREMHS 300 YDHLERNSVL SNDRNVISCS RGKLIKSLFT RKRKLTLMNI DSEEWNRTDL RSYLQRDGVS 360 GNGSIIGLSR RRNGMSRRTS RNFAKPWKDG LYHPTLGRRL PLHVGKVSGE SLSENLTFSN 420 SISGYRSFRH SRQYKPCRYY DGYRLARRQH PLSNISRRPV SREPVPRDHG FNLKSVPFKG 480 PKTLSQIKDE KRKVEENRGL SMKKRHSIGC ASSSADFRGP KPLSDILKDK RKVEKLVKEI 540 IS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGEEFRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNAACSFRH  60
PPMDGAAGKV FESSQSSVPV NKTNIPCYFY FNGFCSKGDT CTFLHGNDIP VAARSTKIGN  120
TSSSEDKTAS SHKNGLASTD ADAFLHPSKK VVGPTIEGTF RESLSHPSAE NVSIRSACAK  180
ISLPECEKVA VDEPVSLPLT EGSKYSRSHV HVVADQSYEE PMMDSSEDEN PLESSTGFDV  240
VVGHESENLD SDDDSEYLLS TNLEQRELDT ELCRDDDEDY IAYEPMHSDL ELLYEREMHS  300
YDHLERNSVL SNDRNVISCS RGKLIKSLFT RKRKLTLMNI DSEEWNRTDL RSYLQRDGVS  360
GNGSIIGLSR RRNGMSRRTS RNFAKPWKDG LYHPTLGRRL PLHVGKVSGE SLSENLTFSN  420
SISGYRSFRH SRQYKPCRYY DGYRLARRQH PLSNISRRPV SREPVPRDHG FNLKSVPFKG  480
PKTLSQIKDE KRKVEENRGL SMKKRHSIGC ASSSADFRGP KPLSDILKDK RKVEKLVKEI  540
IS