PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531158.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 244aa MW: 27370 Da PI: 9.3497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101	1.6e-31	16	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptdeelv +yLk+k+ + +l++ +vi+++d++ ++P+ +p + +++ +fFsk+++ +r t g+Wk+tgk+k ++++ XP_023531158.1 16 LPVGYRFCPTDEELVEHYLKRKAFDLPLPA-SVIPDFDVFLTDPSAFPGDF---KEKRFFFSKQRS------LLRRNTGCGIWKSTGKEKLIVNQ 100 799*************************.99***********554...346788888765......457999************8 PP NAM 96 .kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++vgl+k+Lvfy+ ++++ t+Wvmheyrl XP_023531158.1 101 gINKVVGLRKSLVFYESkVSERTATTRWVMHEYRL 135 65678******76256677899*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MEKTSNFVIN GGMMRLPVGY RFCPTDEELV EHYLKRKAFD LPLPASVIPD FDVFLTDPSA 60 FPGDFKEKRF FFSKQRSLLR RNTGCGIWKS TGKEKLIVNQ GINKVVGLRK SLVFYESKVS 120 ERTATTRWVM HEYRLPRSVS VSATTTPNST QLEMEDWAVY SLFQKRRTPK KKEGRKVAQG 180 SVMGLLRVEE NGGEFSQPCS SCSSGVTQVS SNGTESTDQE ESSSDLGLGL GFSSSYYEAH 240 VRGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	172	RRTPKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	7e-41	NAC family protein