PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531374.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 302aa MW: 32052.1 Da PI: 9.4798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_023531374.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP
2	zf-CCCH	28.7	2.3e-09	269	294	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ G C + +rC+FaHg+ XP_023531374.1 269 FKTKLCANFAK-GNCTFRERCHFAHGE 294 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MDPDGVRKRE RAETALNGNG AFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMNSPAIS PGIRNPVAPP SFPDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWDL GRPNPPPEHG GMGGGPLAQQ PRMGGGWNVP PPQPNHGPAA SFGASATAKI 180 SVDASLAGPI IGKNGVNSKN ICRMTGARLS IKDHESDSSL KNIELEGTFD QINLASSMVR 240 ELIANVGAAS ANNAMRQQQQ HSQHSANNFK TKLCANFAKG NCTFRERCHF AHGESELRKP 300 GM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	6e-72	C3H family protein