PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531401.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 318aa    MW: 35699.1 Da    PI: 6.2357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++ +G+g+W+  +++ g+ R++k+c++rw +yl
   XP_023531401.1 14 KGPWTPEEDQKLVGYIQIHGPGNWRNLPKKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_023531401.1  67 RGRFSFEEEETIIQLHSVLGNK-WSAIAAHLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRAPCCDKN GLKKGPWTPE EDQKLVGYIQ IHGPGNWRNL PKKAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAAHLPGRT DNEIKNYWNT HIRKKLLRMG  120
IDPVTHTPRI DLLDLSSIIA TAIRSHPILG LSTLLNNQAQ ALNPESLRLI STLLALKQED  180
PNANNSHLQN EEHAQIQAQM DTLSQLLQPN DEINNNTNSS MIPITNFVEC SNSQENMNFL  240
ASNLSGDDVN HVYDDGLKPK ASDFGFESVI TTPKSSPTPL NSSSTCINNS CNEDERDSFC  300
SNFLQFEIPQ GLDFADFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-102MYB family protein