PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531481.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 312aa    MW: 35051.1 Da    PI: 6.795
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   XP_023531481.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
   XP_023531481.1  67 RGNFTHHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTYL 112
                      89********************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF THHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNHWNT YLKKKLNNHH  120
HHHHPSPATD LSAAGGGDAR GQWERRLQTD IQMAKQALSD ALSPETTKPP PPPPPKPVDP  180
KTPHHQIPTY ASSADNIARW LKEWNKNSPG NSRRRSSSPP AMESGNFGGE HGGGIKEVGL  240
SESIESFLGF DSFESSNSDL SPETSVFQGE SETDESEELL PMELLEKWLH EDSKDYYFSD  300
IIADEKLKCD LL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-88MYB family protein