PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531486.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 371aa MW: 41454 Da PI: 6.6967

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l+++++ +G g+W+++++ g+ R++k+c++rw +yl XP_023531486.1 14 KGLWSPDEDEKLLNYITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45	2.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_023531486.1 67 RGPFSQHEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQHEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPVS VSADADNDSE KQLPPTSTSH RSNDNSSDEA IETPLPIITS SNSSSQIYSP 180 TQEFFRFQTT TSGSHRASEL VEFLSFHNLN YVSEIANPNP NSLCFNQTSH LLPPPSIPLK 240 PTWEGTDFTA AAATASGGNS FFDGGNFPWG LPECGKTEKL NPTAIIREDK KWSEIMENPF 300 MMGNTTGEQN QESQSQNESM YVENLSTAAE TEFITESGWQ SPTQRQQAQA SSGAVYNKHL 360 HTLTVSFGHT L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQHEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPVS VSADADNDSE KQLPPTSTSH RSNDNSSDEA IETPLPIITS SNSSSQIYSP  180
TQEFFRFQTT TSGSHRASEL VEFLSFHNLN YVSEIANPNP NSLCFNQTSH LLPPPSIPLK  240
PTWEGTDFTA AAATASGGNS FFDGGNFPWG LPECGKTEKL NPTAIIREDK KWSEIMENPF  300
MMGNTTGEQN QESQSQNESM YVENLSTAAE TEFITESGWQ SPTQRQQAQA SSGAVYNKHL  360
HTLTVSFGHT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	9e-90	MYB family protein