PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531519.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 521aa MW: 60414.9 Da PI: 7.2524

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40	9.9e-13	94	155	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkik 65 +W+++e laL+++r+++++ + ++ We+vs++ e gf+r+p +Ckek+e+ ++++ i+ XP_023531519.1 94 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRYRklGEVGFTRTPDKCKEKFEDESRYFNHIN 155 7****************99998.....9*986669********************9876 PP
2	trihelix	90.3	2e-28	398	498	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+++evlaL+++r ++ +++++++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tc XP_023531519.1 398 RWPRDEVLALVNVRCSLYDNSNNNNsnsdqdksggtdqatlPKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTC 491 8************777777765445667778888889999****************************************8.78889 PP trihelix 80 pyfdqle 86 pyf+ql XP_023531519.1 492 PYFHQLS 498 *****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL 60 VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE 120 HVSRYRKLGE VGFTRTPDKC KEKFEDESRY FNHINYNKTC MFLTHELNYH QETEDRGAVV 180 VVPEEAKHEK GNDNNDNNDD NDDNDEQQQS SSKSKRKRKT RTTRQREFEV LKGYCEDIVK 240 NMMIQQEEIH SKLLHEMLKR EEEKIAKEEC WKKQQMERFH KELQMMAQEQ AIASDRQATM 300 IEILNQISIS NPFSSSKSKK DLQNLLHSLN HHHNNNNNLP NSPSSSSLIQ TQNPKNPSSS 360 TRILPPQDPN SNPPPFSIQK LPQNPKSREK EVDDLGKRWP RDEVLALVNV RCSLYDNSNN 420 NNSNSDQDKS GGTDQATLPK APLWERISQG MLQLGYKRSA KRCKEKWENI NKYFRKTKDV 480 NKKRSIDSRT CPYFHQLSTL YNQGGNRSME NLPDNVVGKP L

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL  60
VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE  120
HVSRYRKLGE VGFTRTPDKC KEKFEDESRY FNHINYNKTC MFLTHELNYH QETEDRGAVV  180
VVPEEAKHEK GNDNNDNNDD NDDNDEQQQS SSKSKRKRKT RTTRQREFEV LKGYCEDIVK  240
NMMIQQEEIH SKLLHEMLKR EEEKIAKEEC WKKQQMERFH KELQMMAQEQ AIASDRQATM  300
IEILNQISIS NPFSSSKSKK DLQNLLHSLN HHHNNNNNLP NSPSSSSLIQ TQNPKNPSSS  360
TRILPPQDPN SNPPPFSIQK LPQNPKSREK EVDDLGKRWP RDEVLALVNV RCSLYDNSNN  420
NNSNSDQDKS GGTDQATLPK APLWERISQG MLQLGYKRSA KRCKEKWENI NKYFRKTKDV  480
NKKRSIDSRT CPYFHQLSTL YNQGGNRSME NLPDNVVGKP L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-72	Trihelix family protein