PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531522.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 495aa MW: 57038.1 Da PI: 7.1975

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.8	5.9e-13	94	145	1	57
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 +W+++e laL+++r+++++ + ++ We+vs+k+ e gf+r+p +Ckek+e+ XP_023531522.1 94 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRKLGEVGFTRTPDKCKEKFEDE 145 7****************99998.....9***********************96 PP
2	trihelix	90.4	1.9e-28	372	472	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+++evlaL+++r ++ +++++++ k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tc XP_023531522.1 372 RWPRDEVLALVNVRCSLYDNSNNNNsnsdqdksggtdqatlPKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTC 465 8************777777765445667778888889999****************************************8.78889 PP trihelix 80 pyfdqle 86 pyf+ql XP_023531522.1 466 PYFHQLS 472 *****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL 60 VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE 120 HVSRKLGEVG FTRTPDKCKE KFEDEKTEDR GAVVVVPEEA KHEKGNDNND NNDDNDDNDE 180 QQQSSSKSKR KRKTRTTRQR EFEVLKGYCE DIVKNMMIQQ EEIHSKLLHE MLKREEEKIA 240 KEECWKKQQM ERFHKELQMM AQEQAIASDR QATMIEILNQ ISISNPFSSS KSKKDLQNLL 300 HSLNHHHNNN NNLPNSPSSS SLIQTQNPKN PSSSTRILPP QDPNSNPPPF SIQKLPQNPK 360 SREKEVDDLG KRWPRDEVLA LVNVRCSLYD NSNNNNSNSD QDKSGGTDQA TLPKAPLWER 420 ISQGMLQLGY KRSAKRCKEK WENINKYFRK TKDVNKKRSI DSRTCPYFHQ LSTLYNQGGN 480 RSMENLPDNV VGKPL

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTATPP NSNSLPFLLH SPNFNFHSFD SYDPSSNHPL  60
VHQSSENDNE TTTMANLSVA MDLEDHHRHN HHNQWSNDEL LALLRIRSNI DNCFPESTWE  120
HVSRKLGEVG FTRTPDKCKE KFEDEKTEDR GAVVVVPEEA KHEKGNDNND NNDDNDDNDE  180
QQQSSSKSKR KRKTRTTRQR EFEVLKGYCE DIVKNMMIQQ EEIHSKLLHE MLKREEEKIA  240
KEECWKKQQM ERFHKELQMM AQEQAIASDR QATMIEILNQ ISISNPFSSS KSKKDLQNLL  300
HSLNHHHNNN NNLPNSPSSS SLIQTQNPKN PSSSTRILPP QDPNSNPPPF SIQKLPQNPK  360
SREKEVDDLG KRWPRDEVLA LVNVRCSLYD NSNNNNSNSD QDKSGGTDQA TLPKAPLWER  420
ISQGMLQLGY KRSAKRCKEK WENINKYFRK TKDVNKKRSI DSRTCPYFHQ LSTLYNQGGN  480
RSMENLPDNV VGKPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	8e-73	Trihelix family protein