PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531527.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 152aa    MW: 16688.2 Da    PI: 8.6977
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.34.3e-46171171101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dCv+apyfpa+qp+kf  vhk+FGasnv+kll++lpe++r+da+sslvyeA+ar+rdP+yG+vg+i+ lq+q++ l+++la
  XP_023531527.1  17 PCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSLVYEANARIRDPIYGCVGTISCLQRQVDALQQQLA 111
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +++++l
  XP_023531527.1 112 MTQAQL 117
                     *99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MAKEMMKGSC KKGAPSPCAA CKLLRRRCTQ DCVFAPYFPA DQPHKFSSVH KVFGASNVTK  60
LLQELPEQHR SDAVSSLVYE ANARIRDPIY GCVGTISCLQ RQVDALQQQL AMTQAQLLHF  120
KMAQFSLASQ PSSTDDVLPS PPNTNVPSFT SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-54LBD family protein