PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531543.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 439aa MW: 48348.4 Da PI: 6.2961

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_023531543.1 28 KGPWTTAEDGILIEYVQKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	50.6	4.6e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ XP_023531543.1 81 KGSFSQEEERLIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 124 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL 60 ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN 120 YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ 180 NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQQ 240 LVNNNNSLSP LPLPVLPSQA ALQLSYGGYM EAEARSRNGK QTKEESSSGG QLKRTAEQGS 300 TEEQGANNLN VGSVVGSSGG DAAVPAGENH SDGFSSTHSS SRKRQRMEPL EEMDSMVDDD 360 LMSLLSNFQT GMPVPELYPN SNNDDLGINT HNDLSLCETN GNRDEDEQQP NVGTTVAVAS 420 PVLEWSLGSS CWNNMPSIC

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL  60
ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN  120
YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ  180
NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQQ  240
LVNNNNSLSP LPLPVLPSQA ALQLSYGGYM EAEARSRNGK QTKEESSSGG QLKRTAEQGS  300
TEEQGANNLN VGSVVGSSGG DAAVPAGENH SDGFSSTHSS SRKRQRMEPL EEMDSMVDDD  360
LMSLLSNFQT GMPVPELYPN SNNDDLGINT HNDLSLCETN GNRDEDEQQP NVGTTVAVAS  420
PVLEWSLGSS CWNNMPSIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	2e-72	MYB family protein