PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531554.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 269aa    MW: 29247.5 Da    PI: 9.5202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-12116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG g+W+ I+r   + Rt+ q+ s+ qky
   XP_023531554.1 116 PWTEEEHRIFLIGLEKLGRGDWRGISRNYVTSRTPTQVASHAQKY 160
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGRKCSHCGN IGHNSRTCTN FIPSTPNLVG SNGIIRLFGV HLDASSSSSS SSFPIKKSFS  60
TDCLPSSSPS PSSSSSFSSS TRVHLDHNSL EETRSSNGYL SDGLLTREQE RKKGVPWTEE  120
EHRIFLIGLE KLGRGDWRGI SRNYVTSRTP TQVASHAQKY FLRQSTANKK NRRSSLFDTV  180
GAANDSTTTN SKNIEVSLKN PTRSSCMEVM KNNEEQQLLG ASSSSPSSVW VYDDLELTLG  240
APRAPNLELE QPKKAPPPGS LLVGPISVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-58MYB_related family protein