PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531621.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 554aa MW: 61051.7 Da PI: 8.6948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.8	7e-17	251	300	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr l+P++ ++K +Ka+ L ++veYI+ Lq XP_023531621.1 251 RSKHSATEQRRRSKINDRFQMLRGLIPHS----DQKKDKASFLLEVVEYIQFLQ 300 889***********************9....8*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRPSSQGG YLKTHDFLEP QERKRKASSK 60 KEINVERPPP PVPPTSVEHF LPGGIGTFSI SQVSYFDQRT LPKPEGSVFT GARSSSSGER 120 NDENSNGSGF TLWEECAVKK GKTGKENILG DRPHEPRAST SQWTASMERP SQSSSNNHHN 180 AFSCFSSSQP RGKKNPSFME MLKSAKSNSQ DEELDDDGDF VIKKEISTAN KGELRIKVDG 240 NSSDQKANTP RSKHSATEQR RRSKINDRFQ MLRGLIPHSD QKKDKASFLL EVVEYIQFLQ 300 EKVQKYEGSY HEWNREIAKL MPLRNNQRSA DGYNDQSRGV DNGPGPALVF SANFVEKNAP 360 LSPLVPGSSH NAVDSDTSSA TTLKAVDHHP GRTNNVVPFP MSIPPKLYAP TRDGSVVPQA 420 SKPLSSDTDH PSSQSQILSY QARCYNNDAA VASELQKEQD LTIEGGTVNI SSVYSQGLLN 480 TLTHALQRSG VDLSQARISV QIELGELANR RVTAPSSIVK DNNIPINDME TIHTRVSAAE 540 DSERATKKLK TVKS

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRPSSQGG YLKTHDFLEP QERKRKASSK  60
KEINVERPPP PVPPTSVEHF LPGGIGTFSI SQVSYFDQRT LPKPEGSVFT GARSSSSGER  120
NDENSNGSGF TLWEECAVKK GKTGKENILG DRPHEPRAST SQWTASMERP SQSSSNNHHN  180
AFSCFSSSQP RGKKNPSFME MLKSAKSNSQ DEELDDDGDF VIKKEISTAN KGELRIKVDG  240
NSSDQKANTP RSKHSATEQR RRSKINDRFQ MLRGLIPHSD QKKDKASFLL EVVEYIQFLQ  300
EKVQKYEGSY HEWNREIAKL MPLRNNQRSA DGYNDQSRGV DNGPGPALVF SANFVEKNAP  360
LSPLVPGSSH NAVDSDTSSA TTLKAVDHHP GRTNNVVPFP MSIPPKLYAP TRDGSVVPQA  420
SKPLSSDTDH PSSQSQILSY QARCYNNDAA VASELQKEQD LTIEGGTVNI SSVYSQGLLN  480
TLTHALQRSG VDLSQARISV QIELGELANR RVTAPSSIVK DNNIPINDME TIHTRVSAAE  540
DSERATKKLK TVKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-107	bHLH family protein