PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531676.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 32531.2 Da PI: 4.6904

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4e-20	76	129	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k XP_023531676.1 76 KKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 129 566899***********************************************9 PP
2	HD-ZIP_I/II	129	1.9e-41	75	163	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl++eqv++LE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd l+++ +++ ke++ L++ XP_023531676.1 75 EKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIIKENAVLKS 163 69**********************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MESGRFLFNP PACGGNMLCL GGAGGGDRFL REGRTMMSMS MNMSMSMQES PNGRPFFRSP 60 DDLYDDEYYD ELYPEKKRRL ANEQVQMLEK SFEEENKLEP ERKSQLAKKL GLQPRQVAVW 120 FQNRRARWKT KQLERDYDVL KASYDLLMSN YDSIIKENAV LKSEKCVAKE LDGGEAPIPR 180 TTSEPLRADT AHVSAPHSGG SGRKAEDRLS SGSDSSAVID DNCLQLIDSG DSYFLSNEYP 240 QRAPLPPGLQ MEHDDRNDNS NYLFSDMFAE TNQQNQEGGP PAWWAWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-70	HD-ZIP family protein