PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531902.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 885aa    MW: 98758.8 Da    PI: 5.9911
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23171272199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023531902.1 171 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 261
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023531902.1 262 KNQLLLGIRRA 272
                     9999****997 PP
2Auxin_resp1187.6e-39297380183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_023531902.1 297 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 380
                     79********************************86599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    
MLSIERYEFP AGFLSCPLGF YYSFLFLIFL CFETFFSDWV KLDMKLSTSG FGQQDHEGGE  60
KKCLNSELWH ACAGPLVSLP TSGTRVVYFP QGHSEQVAAT TNKEVDGHIP NYPNLPPQLI  120
CQLHNVTMHA DVETDEVYAQ MTLQPLTAQE QKDTFLPMEL GIPSRQPTNY FCKTLTASDT  180
STHGGFSVPR RAAEKVFPPL DFSQQPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW  240
SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA  300
AATNSCFTVF YNPRASPSEF VIPLTKYVKA VFHTRVSVGM RFRMLFETEE SSVRRYMGTI  360
TGISDLDPVR WSNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP  420
WHPGVSSVHD NRDDASNGLM WLRGGVGEQA LHSLNLQSAG SLPWLQQRLD SSMFGNDHNQ  480
QYQAMLAAGM PNLGGVDMLR QQIMHLQQPF QYAQQAGLHN SLLQLQQHQL VQQSMSQNIL  540
QAPSQVMAEN LPQHILQQTL QNQPEDLPNQ QQHTYHDTVQ VQSNQFHQGG HSNVPSPTFP  600
RSNLVDSNSN YPESISSRRN IIASSCAEGT GNLSNIYRSG QSILTEQLPQ QSPVSKNAHS  660
PVDAHPNSMS FPFSGRDSIL ELGNCNSDSP SPTLFGVNID SSGLLLPSNV PTYASPSIAP  720
DSTSMPLGDS GFQNSLYNCV QGSSELLHSS GQVDPSNPTQ TFVKVYKTGS IGRSLDISRF  780
SSYQELREEL AQMFGIEGQL EDPRRSGWQL VFVDRENDAL LLGDDPWEAF VNNVWYIKIL  840
SPQDVQELRE QVIESFNPID GQRLTSGSNE AENVSGLPSV GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein