PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532475.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 323aa    MW: 36775.6 Da    PI: 4.7313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed +l+  ++ +G ++W++ ++  g+ R++k+c++rw +yl
   XP_023532475.1 16 RGPWSPAEDFRLITFIQNHGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding53.26.9e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +++++k +G++ W++Ia++++ gRt++++k+ w+++l
   XP_023532475.1  69 RGNFTQDEEETIIKLHKTWGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGKGRAPCCD KNEVKRGPWS PAEDFRLITF IQNHGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTQDEEETI IKLHKTWGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLPP  120
TSKVSDSSED EPKESRTTSS SSSSSVLFPN ENQNLETEPL NKSNPINDNL VCSKQQTTSA  180
SISSNSISSS QVEGCWPQNG VDSGGEVKEK KENDDDEEEM GSKSNNMGIK IPLESDIEFW  240
DMLDLDNIHL FESDEVNPSY CEGSNFVVQK NREFENDEWF KYLENELGLN RPPEADDITA  300
TEKFSVDVDP CMAYFAEGFT RQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-74MYB family protein