PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532571.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 418aa    MW: 49710.6 Da    PI: 9.428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1646137198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffk+ +++   +++ l lp+kf+ ++  +     +   tl  ++g  Wev+l  +k++g++ +++GW eFv+  ++k+g fvvF+l+g+++f  +
  XP_023532571.1  46 FFKIILHHTLIERK-LDLPNKFVINNraS---LLHNSATLSLPDGANWEVEL--KKSDGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCF--N 132
                     77888777777776.********999532...455679999999********..*************************************9..8 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v +f+
  XP_023532571.1 133 VLIFD 137
                     88887 PP
2B366.24.9e-21317415199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f  ++ ps+  + + l+lp++fae++  +  es++++le  +gr W+v +  ++  +++r+ l+ GWk+F+ +n+LkegD++vF+l++r  +  +
  XP_023532571.1 317 FMVTMRPSYIQTGNYLSLPRSFAERYL-Q--ESTDVKLEVADGRIWSVWCgvRWAFTRRRTELKCGWKRFAVDNQLKEGDVCVFELMNRiPKVFF 408
                     778999********************4.4..5679*************98667778888899*************************99988889 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     +v++fr+
  XP_023532571.1 409 KVTIFRR 415
                     9999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MINFGRVLHD FIDYCCVFTI NNKQKPNRKH KQSLRMAFFT SPIPHFFKII LHHTLIERKL  60
DLPNKFVINN RASLLHNSAT LSLPDGANWE VELKKSDGKV SFARGWPEFV EFYNVKAGYF  120
VVFRLEGNRC FNVLIFDLSA TEVDYPIKPR IFRRLRKDRN IAFDRRPPIL LPKSENEDED  180
DSVVVLNDAV SRKRKREKDH EAAFCSLREM KKMMRTNMKI KHQRFTTPQR FSDDDEEDED  240
EDEEEEEDEE DDEEEDYSWR RRKYRGSARN HEDGGRFSPE SMRPMHPPRT PKPLTENQDR  300
VLRIASSFKL RTKNPSFMVT MRPSYIQTGN YLSLPRSFAE RYLQESTDVK LEVADGRIWS  360
VWCGVRWAFT RRRTELKCGW KRFAVDNQLK EGDVCVFELM NRIPKVFFKV TIFRRPAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RKRKREK
2192221RKRKREKDHEAAFCSLREMKKMMRTNMKIK
3193222RKRKREKDHEAAFCSLREMKKMMRTNMKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-23B3 family protein