PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532934.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 244aa    MW: 27444.9 Da    PI: 6.7696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_023532934.1 14 KGPWTPEEDQILINYINLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e + +++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_023532934.1  67 RGNFTQQEEETIMKLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MVRGPCCEKM GLKKGPWTPE EDQILINYIN LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TQQEEETIMK LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRITQNY  120
ATPQLRNYTA VNRQSYGGDI PAVAGEESAA QSYKFTTFHS MQSCGSASSP PHCSSESSSI  180
VTAENGELST NNLPEADDSF WMEVLANDQI AMVGSQQGFV GEIYEGQFGN LTMEQPVNET  240
MDFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-77MYB family protein