PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532955.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 279aa MW: 31572.6 Da PI: 6.8591

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.9e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEde+l+d v++ G g+W++ +++ g++R++k+c++rw +yl XP_023532955.1 14 KGPWTTEEDEKLIDFVAKNGHGSWRALPERAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.5	6.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ +++++k lG++ W++Ia++++ gRt++++k++w+++l XP_023532955.1 67 RGNFSKEEESSIIELHKTLGNR-WSKIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGRSPCCDEH GIKKGPWTTE EDEKLIDFVA KNGHGSWRAL PERAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEESSIIE LHKTLGNRWS KIASHLPGRT DNEIKNFWNT HLRKKLLQMG 120 IDPNTHKRRT DLDHLLNLSP LINGINNPLN SDYLKVQAEI AKLQVLQNLC QLLNPTTMNE 180 PLNPDPNPNP SQFQVDFSTR LAPGSGFENG LVGLETGDVN YYPLPPLISE SPGSTSNVNQ 240 IECGTYPFCG FPKPPSIFDT LESMMNEESS ESYWNRILQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-79	MYB family protein