PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532959.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 515aa MW: 57758.1 Da PI: 4.8797

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8.1e-28	279	332	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++W+peLH++F++aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+ XP_023532959.1 279 KTKVDWSPELHRKFIQAVEQL-GIDRAIPSKILELMKVEGLTRHNVASHLQKYRM 332 6799***************.******************************8 PP
2	Myb_DNA-binding	42.2	1.8e-13	282	331	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e++ ++++av+qlG + +++I + m +g+t+ ++ s++qky+ XP_023532959.1 282 VDWSPELHRKFIQAVEQLGIDraIPSKILELMKvEGLTRHNVASHLQKYR 331 57***********************************************7 PP
3	Response_reg	24.1	1.8e-09	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + +++ le+ +y +v ++d +eal ++ + +++ +l + + e +k + +++ +l ii+ ++ +++ +++ +G XP_023532959.1 20 VLLLDRDGHSAAEITSTLEEMEY-VVCYCSDEKEALSTILNTPenFHVAILEMCKGN--YDESFKLLGSSK-DLSIIMTSDVYCLSTMMKCIALG 110 56667777777889999****.***********665555999999866655..458888887766.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++e+l++ XP_023532959.1 111 AVEFLLKPLSEEKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MVCTADDLQE WKDFPKGLRV LLLDRDGHSA AEITSTLEEM EYVVCYCSDE KEALSTILNT 60 PENFHVAILE MCKGNYDESF KLLGSSKDLS IIMTSDVYCL STMMKCIALG AVEFLLKPLS 120 EEKLRNIWQH VLHKAFSSTP KAEVDSAASL MQLQLESEDN NGVLEDTEVL SWIQDVVWEQ 180 EQPEGSVISQ LNQGSSLQGC WESENQMNCP METDCSDKDV QSNFVETTSH DLVCEDTLQE 240 GQPRLSGKNK CGVKSGPSAA EHSIQGSDVN PSASSKARKT KVDWSPELHR KFIQAVEQLG 300 IDRAIPSKIL ELMKVEGLTR HNVASHLQKY RMQRKHVMHR EEIPTRYSMQ TNHSPPLMAY 360 PSSYPYCGIS MSTVYRTWTQ TNGHPANVNM RGPPDYRHWP QPGTQPWNSY AGMQADAWGC 420 PVMLPSPAPY FSYPQQISSS HNVYTANKSY GTPQSSFDLQ PDEELIDEIV NEAKRKPWSP 480 LPLGLKPPSA EILLEELPKQ GISTLTPQIN AFNPP

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MVCTADDLQE WKDFPKGLRV LLLDRDGHSA AEITSTLEEM EYVVCYCSDE KEALSTILNT  60
PENFHVAILE MCKGNYDESF KLLGSSKDLS IIMTSDVYCL STMMKCIALG AVEFLLKPLS  120
EEKLRNIWQH VLHKAFSSTP KAEVDSAASL MQLQLESEDN NGVLEDTEVL SWIQDVVWEQ  180
EQPEGSVISQ LNQGSSLQGC WESENQMNCP METDCSDKDV QSNFVETTSH DLVCEDTLQE  240
GQPRLSGKNK CGVKSGPSAA EHSIQGSDVN PSASSKARKT KVDWSPELHR KFIQAVEQLG  300
IDRAIPSKIL ELMKVEGLTR HNVASHLQKY RMQRKHVMHR EEIPTRYSMQ TNHSPPLMAY  360
PSSYPYCGIS MSTVYRTWTQ TNGHPANVNM RGPPDYRHWP QPGTQPWNSY AGMQADAWGC  420
PVMLPSPAPY FSYPQQISSS HNVYTANKSY GTPQSSFDLQ PDEELIDEIV NEAKRKPWSP  480
LPLGLKPPSA EILLEELPKQ GISTLTPQIN AFNPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	4e-93	ARR-B family protein