PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532978.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 510aa MW: 57408.3 Da PI: 7.5446

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_023532978.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_023532978.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN 120 SIAPATTTMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLFTFNTS 180 SQELFHDTLG LNPDTTTTWH LNHQYHHHHH HHPFLSAVLD PEIELGASTT GATSVMNNTN 240 SYLPPLIENI ESLVGMDDEG EMALECLQRQ DVNDWVVESS QPQNSNFLFW ENVEGSLGGE 300 EVIAPTSNST WKGFFVAADS SARAVADHFV KMIIPEKNRR EISKYLFQEG VCYAKKDFNL 360 AKHPEIDVPN LQVIKLMQSF KSKEYVRETF AWMHYYWYLT NDGIEFLRTY LNLPSEIVPA 420 TLKKQAKPAG RPFGGPSGDR PRPSRFDGER RFGGDRDGYR GGPRGSGGDF GDKGGAPADY 480 RPSFGGPGGR PGFGRGAGGY GGAPAPSNLE

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRRPN  120
SIAPATTTMT TTTVPTTNTE HIQLSSNPHQ LNFLTQDLTT KQLSLHQETL FPTLFTFNTS  180
SQELFHDTLG LNPDTTTTWH LNHQYHHHHH HHPFLSAVLD PEIELGASTT GATSVMNNTN  240
SYLPPLIENI ESLVGMDDEG EMALECLQRQ DVNDWVVESS QPQNSNFLFW ENVEGSLGGE  300
EVIAPTSNST WKGFFVAADS SARAVADHFV KMIIPEKNRR EISKYLFQEG VCYAKKDFNL  360
AKHPEIDVPN LQVIKLMQSF KSKEYVRETF AWMHYYWYLT NDGIEFLRTY LNLPSEIVPA  420
TLKKQAKPAG RPFGGPSGDR PRPSRFDGER RFGGDRDGYR GGPRGSGGDF GDKGGAPADY  480
RPSFGGPGGR PGFGRGAGGY GGAPAPSNLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	8e-91	MYB family protein