PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533075.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 159aa    MW: 17638.1 Da    PI: 4.6314
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.62.2e-4371061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp ++p kfa+vhk+FGasnv+k+l++lp ++r+da++s+vyeA ar+rdPvyG+vg i+ lq+q+++l+ +la
  XP_023533075.1   7 PCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLA 101
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023533075.1 102 AAQAE 106
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MGAGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPYKFAIVH KIFGASNVSK MLQELPLDQR  60
PDAVNSMVYE ASARMRDPVY GCVGAITFLQ NQVSRLEMQL AAAQAEILSF QMQQQAAPAS  120
FPMTQMNQYD QNLVFLSNAD SFNSVDGSPE VEDYCSLWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-70LBD family protein