PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533209.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 242aa    MW: 27752.1 Da    PI: 6.6709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l  +v+++G++ W+ +++  g+ R++k+c++rw++yl
   XP_023533209.1 14 RGAWSSEEDDKLMGYVQKHGPRKWRQVPSLAGLARCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.74.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T eE +l+ ++++++G++ W+ Ia +++ gRt++++k++w+ +
   XP_023533209.1  67 KGNYTDEENDLICKLHEMHGNR-WSMIATKLP-GRTDNEIKNYWNAH 111
                      7999******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MVRAPIVDKD GVKRGAWSSE EDDKLMGYVQ KHGPRKWRQV PSLAGLARCG KSCRLRWLNY  60
LRPGLKKGNY TDEENDLICK LHEMHGNRWS MIATKLPGRT DNEIKNYWNA HLKKQVERKS  120
ESSTQPKPKK LRPNIAFDLE AKTEEFTGYC STKFGIVESS SLSVQTSSSS SDANFGRLNW  180
AVEEYDQSGY GDLWNEPFIW DGDDVRYVLD GSMQFSPDNG MFSPQVHETT YDDYIDLFCS  240
LL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.12e-54MYB family protein